Best E-Invoicing Software for Logistics in Malaysia 2026
Malaysia's logistics industry — encompassing freight forwarding, warehousing, haulage, and last-mile delivery — deals with complex billing scenarios involving cross-border shipments, customs declarations, multi-leg freight charges, and fleet management costs. E-invoicing solutions for logistics must handle the high transaction volumes, multi-party billing arrangements, and customs integration required by LHDN's MyInvois framework while keeping operations running smoothly across the supply chain.
Logistics E-Invoicing Solutions
21 vendors found
AutoCount
Enterprise-grade on-premise accounting with robust e-invoicing
From RM120/mo
HashMicro
Enterprise ERP with end-to-end e-invoicing for complex operations
From RM350/mo
Jom eInvoice
Malaysia-built e-invoicing made simple for every business
From RM79/mo
SQL Accounting
Malaysia's #1 accounting software with built-in LHDN e-invoicing
From RM80/mo
Zoho Books
All-in-one cloud accounting with automated MyInvois e-invoicing
From RM100/mo
Access UBS
Malaysia most-used desktop accounting � e-invoicing free for existing users
Contact for pricing
CelcomDigi Business
LHDN e-invoicing with a hardware soundbox � all-in-one for merchants
From RM88/mo
ClearTax Malaysia
Enterprise e-invoicing middleware with AI data enrichment and ERP connectors
Contact for pricing
Deskera
AI-powered cloud ERP with Peppol-ready e-invoicing
From RM199/mo
Finexus AREMA
Malaysia first live LHDN e-invoicing provider � 1M+ invoices/month
Contact for pricing
Flick Network
Global e-invoicing middleware with 2000+ validation checks and Peppol
Contact for pricing
Info-Tech
Established Malaysian accounting software with proven e-invoicing compliance
From RM90/mo
InvoisPro
AI-powered Peppol Access Point middleware � free tier available
Contact for pricing
Microsoft Dynamics 365
Native MyInvois e-invoicing in Dynamics 365 Finance and Business Central
From RM700/mo
Million Accounting
No annual subscription � Malaysian accounting built for SMEs
From RM42/mo
Odoo Malaysia
Open-source ERP with native MyInvois and Peppol integration
From RM100/mo
Oracle NetSuite
Cloud ERP with native MyInvois SuiteApp and Avalara Peppol
From RM2500/mo
QNE Accounting
Smart AI cloud accounting with Peppol and MyInvois built in
From RM62/mo
Sage
Global business software with enterprise-grade Malaysia e-invoicing
From RM250/mo
SAP Business One
Mid-market ERP with MyInvois via certified Malaysian partners
From RM1500/mo
Wavelength
Malaysian-built ERP with hands-on e-invoicing implementation support
From RM150/mo
Professional Services
Find an Accountant for Your Logistics Business
MIA-registered accounting firms with MyInvois e-invoicing experience serving Malaysian logistics businesses.
Logistics E-Invoicing FAQ
How does e-invoicing work for freight billing?
What about cross-border logistics and e-invoicing?
How do customs declarations integrate with e-invoicing?
Can e-invoicing handle fleet management billing?
How do third-party logistics (3PL) providers manage e-invoicing?
Check Your E-Invoicing Readiness
Not sure if your logisticsbusiness is ready for LHDN's e-invoicing mandate? Use our free readiness calculator to find out.