E-InvoicingMalaysia

Deskera vs Zoho Books

Side-by-side comparison for LHDN MyInvois e-invoicing in Malaysia 2026. Find out which solution fits your business.

Last updated: March 2026Independent comparison — not affiliated with either vendor
Deskera logo

Deskera

AI-powered cloud ERP with Peppol-ready e-invoicing

LHDN CertifiedPeppol ReadySaaSFrom RM199/mo
Leads on 2 criteria
Zoho Books logo

Zoho Books

All-in-one cloud accounting with automated MyInvois e-invoicing

LHDN CertifiedPeppol ReadySaaSFrom RM100/mo

Feature Comparison

FeatureDeskeraZoho Books
Starting Price
RM199/mo
RM100/moBetter
Software Type
SaaS
SaaS
LHDN Certified
✓
✓
Peppol Ready
✓
✓
API Available
✓
✓
Implementation Support
✓
✓
Industries Covered
4
8Better

Industry Coverage

IndustryDeskeraZoho Books
Manufacturing✓✓
Professional Services✓✓
Retail✓✓
Logistics✓✓
F&B–✓
Construction–✓
Healthcare–✓
Education–✓

About Deskera

Deskera is a cloud-based business suite offering ERP, CRM, and HR modules with integrated LHDN e-invoicing. Its AI-powered automation handles invoice matching, approval workflows, and multi-currency transactions. Deskera is Peppol-ready and particularly suited for businesses with cross-border operations requiring compliant document exchange across Southeast Asia.

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About Zoho Books

Zoho Books is part of the Zoho ecosystem and delivers robust e-invoicing capabilities for Malaysian businesses of all sizes. With automated MyInvois submission, multi-currency support, and workflow automation, it covers everything from daily invoicing to year-end tax filing. Its API integrations allow connection to CRM, inventory, and HR modules for a unified business platform.

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Choose Deskera if…

  • ✓You prefer a cloud-based solution with no hardware
View Deskera profile

Choose Zoho Books if…

  • ✓More affordable starting price (RM100/mo)
  • ✓Your business spans multiple industries
  • ✓You prefer a cloud-based solution with no hardware
View Zoho Books profile

Frequently Asked Questions

Is Deskera or Zoho Books better for MyInvois in Malaysia?

Both Deskera and Zoho Books support LHDN MyInvois e-invoicing in Malaysia. Deskera is Peppol-ready, while Zoho Books is Peppol-ready. The best choice depends on your invoice volume, industry, and whether you need Peppol for B2G or international transactions.

What is the price difference between Deskera and Zoho Books?

Deskera starts from RM199/month. Zoho Books starts from RM100/month. Actual costs vary based on users, modules, and transaction volume.

Does Deskera support Peppol e-invoicing in Malaysia?

Yes, Deskera is Peppol-ready, meaning it supports Peppol Access Point integration for cross-border and B2G e-invoicing in Malaysia.

Which industries does Deskera support?

Deskera supports the following industries: Manufacturing, Professional Services, Retail, Logistics.

Can I switch from Deskera to Zoho Books mid-year?

Switching e-invoicing software mid-year is possible but requires careful data migration planning. Ensure your historical e-invoice records and UUIDs from MyInvois are exported before switching. Both vendors may offer data migration support — confirm with each vendor before committing.

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EInvoicingMalaysia.com is an independent directory. We are not affiliated with LHDN or the Malaysian government.