E-InvoicingMalaysia

Deskera vs QuickBooks

Side-by-side comparison for LHDN MyInvois e-invoicing in Malaysia 2026. Find out which solution fits your business.

Last updated: March 2026Independent comparison — not affiliated with either vendor
Leads on 3 criteria
Deskera logo

Deskera

AI-powered cloud ERP with Peppol-ready e-invoicing

LHDN CertifiedPeppol ReadySaaSFrom RM199/mo
QuickBooks logo

QuickBooks

Trusted global accounting software with Malaysia e-invoicing built in

LHDN CertifiedSaaSFrom RM130/mo

Feature Comparison

FeatureDeskeraQuickBooks
Starting Price
RM199/mo
RM130/moBetter
Software Type
SaaS
SaaS
LHDN Certified
✓
✓
Peppol Ready
✓Better
–
API Available
✓
✓
Implementation Support
✓Better
–
Industries Covered
4Better
3

Industry Coverage

IndustryDeskeraQuickBooks
Manufacturing✓–
Professional Services✓✓
Retail✓✓
Logistics✓–
F&B–✓

About Deskera

Deskera is a cloud-based business suite offering ERP, CRM, and HR modules with integrated LHDN e-invoicing. Its AI-powered automation handles invoice matching, approval workflows, and multi-currency transactions. Deskera is Peppol-ready and particularly suited for businesses with cross-border operations requiring compliant document exchange across Southeast Asia.

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About QuickBooks

QuickBooks by Intuit brings its world-class accounting features to the Malaysian market with full LHDN e-invoicing compliance. It automates invoice generation, tracks expenses, and syncs with bank feeds in real time. The API enables custom integrations, making it a flexible choice for service-based businesses and retail operators managing high transaction volumes.

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Choose Deskera if…

  • ✓You need Peppol for B2G or international invoicing
  • ✓You want hands-on implementation support
  • ✓Your business spans multiple industries
  • ✓You prefer a cloud-based solution with no hardware
View Deskera profile

Choose QuickBooks if…

  • ✓More affordable starting price (RM130/mo)
  • ✓You prefer a cloud-based solution with no hardware
View QuickBooks profile

Frequently Asked Questions

Is Deskera or QuickBooks better for MyInvois in Malaysia?

Both Deskera and QuickBooks support LHDN MyInvois e-invoicing in Malaysia. Deskera is Peppol-ready, while QuickBooks does not currently support Peppol. The best choice depends on your invoice volume, industry, and whether you need Peppol for B2G or international transactions.

What is the price difference between Deskera and QuickBooks?

Deskera starts from RM199/month. QuickBooks starts from RM130/month. Actual costs vary based on users, modules, and transaction volume.

Does Deskera support Peppol e-invoicing in Malaysia?

Yes, Deskera is Peppol-ready, meaning it supports Peppol Access Point integration for cross-border and B2G e-invoicing in Malaysia.

Which industries does Deskera support?

Deskera supports the following industries: Manufacturing, Professional Services, Retail, Logistics.

Can I switch from Deskera to QuickBooks mid-year?

Switching e-invoicing software mid-year is possible but requires careful data migration planning. Ensure your historical e-invoice records and UUIDs from MyInvois are exported before switching. Both vendors may offer data migration support — confirm with each vendor before committing.

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EInvoicingMalaysia.com is an independent directory. We are not affiliated with LHDN or the Malaysian government.