Best E-Invoicing Software for Retail in Malaysia 2026: Full Comparison

Compare 30 vendors with LHDN-certified e-invoicing solutions built for Malaysian retail businesses — pricing, Peppol, features and expert picks.

Updated 2026LHDN MyInvois CompliantPhase 4 Ready

Retail is the highest-volume sector for consolidated e-invoicing in Malaysia. Physical retail outlets, e-commerce stores, and multi-outlet chains all face the challenge of managing thousands of daily consumer transactions while maintaining LHDN compliance. For walk-in customers who do not request an individual e-invoice, retailers can issue a single daily consolidated e-invoice — dramatically reducing the administrative burden compared to issuing per-customer invoices.

Multi-outlet management and POS integration are the two most critical features for retail e-invoicing. Your software must be able to pull transaction data from every outlet's POS system, consolidate it correctly, and submit to MyInvois before the end of the next business day. SST handling for retail (6% Sales Tax on taxable goods) must be correctly mapped to your product categories. Franchise operators and large retail chains should also consider Peppol readiness for supplier-facing B2B invoicing.

All E-Invoicing Vendors for Retail (30)

Sorted by price, lowest first. Vendors marked Best Value are the cheapest option for this industry. Peppol-certified vendors are highlighted.

Vendor	Price/mo	Type	LHDN	Peppol	API	Support
Access UBSBest Value	RM 0	On-premise	✓	—	—	—	View →
Finexus AREMA	RM 0	Standalone E-Invoicing	✓	Peppol ✓	✓	✓	View →
InvoisPro	RM 0	Standalone E-Invoicing	✓	Peppol ✓	✓	—	View →
Financio	RM 5	SaaS	✓	—	—	—	View →
Million Accounting	RM 42	On-premise	✓	—	—	✓	View →
Bukku	RM 50	SaaS	✓	—	—	—	View →
QNE Accounting	RM 62	SaaS	✓	Peppol ✓	✓	✓	View →
Biztory	RM 69	SaaS	✓	—	—	—	View →
Jom eInvoice	RM 79	SaaS	✓	—	✓	✓	View →
SQL Accounting	RM 80	SaaS	✓	—	✓	✓	View →
ABSS Accounting	RM 83	Hybrid	✓	—	—	✓	View →
CelcomDigi Business	RM 88	Standalone E-Invoicing	✓	—	—	✓	View →
Info-Tech	RM 90	On-premise	✓	—	✓	✓	View →
Eats365 POS	RM 99	SaaS	✓	—	—	✓	View →
StoreHub	RM 99	SaaS	✓	—	—	✓	View →
Odoo Malaysia	RM 100	Hybrid	✓	Peppol ✓	✓	✓	View →
Zoho Books	RM 100	SaaS	✓	Peppol ✓	✓	✓	View →
AutoCount	RM 120	On-premise	✓	—	✓	✓	View →
QuickBooks	RM 130	SaaS	✓	—	✓	—	View →
Slurp! POS	RM 150	SaaS	✓	—	—	—	View →
Xero	RM 150	SaaS	✓	Peppol ✓	✓	✓	View →
Wavelength	RM 150	On-premise	✓	—	✓	✓	View →
EasyStore	RM 199	SaaS	✓	—	✓	—	View →
Deskera	RM 199	SaaS	✓	Peppol ✓	✓	✓	View →
HashMicro	RM 350	Hybrid	✓	Peppol ✓	✓	✓	View →
Microsoft Dynamics 365	RM 700	Hybrid	✓	Peppol ✓	✓	✓	View →
SAP Business One	RM 1500	Hybrid	✓	Peppol ✓	✓	✓	View →
Oracle NetSuite	RM 2500	Hybrid	✓	Peppol ✓	✓	✓	View →
ClearTax Malaysia	Contact	Standalone E-Invoicing	✓	—	✓	✓	View →
Flick Network	Contact	Standalone E-Invoicing	✓	Peppol ✓	✓	—	View →

Top 3 Picks for Retail

Expert-selected vendors based on fit, features, pricing, and adoption within Malaysian retail businesses.

StoreHub

#1 Pick

Built-in POS-to-e-invoice pipeline makes it the most seamless option for physical retail outlets.

From RM 99/moLHDN ✓

View Details

AutoCount

#2 Pick

Widely adopted by Malaysian retail chains with strong multi-outlet and inventory-linked billing.

From RM 120/moLHDN ✓

View Details

Zoho Books

#3 Pick

Peppol-ready for franchise/export retail with consolidated invoice support and competitive pricing.

From RM 100/moPeppol ✓LHDN ✓

View Details

Pricing Tiers for Retail

Vendors supporting retail grouped by monthly subscription cost.

Under RM100/mo

RM100–RM250/mo

Odoo MalaysiaRM 100
Zoho BooksRM 100
AutoCountRM 120
QuickBooksRM 130
Slurp! POSRM 150
XeroRM 150
WavelengthRM 150
EasyStoreRM 199
DeskeraRM 199

RM250+/mo

* Prices shown are starting/from prices in RM per month. Actual costs depend on invoice volume, user count, and selected plan. Verify current pricing with each vendor.

Key Features for Retail: Vendor Comparison

Industry-specific features across vendors that serve retail businesses. Based on published vendor capabilities.

Vendor	POS Integration	Multi-outlet	Consolidated Invoice	Inventory Link	SST Retail
Financio	–	–	✓	–	–
Bukku	–	–	✓	✓	–
Biztory	–	–	✓	–	✓
SQL Accounting	✓	✓	✓	✓	✓
CelcomDigi Business	–	–	✓	–	–
Info-Tech	✓	✓	✓	✓	✓
StoreHub	✓	✓	✓	✓	✓
Zoho Books	–	✓	✓	✓	✓
AutoCount	✓	✓	✓	✓	✓
QuickBooks	–	–	✓	–	✓
Xero	–	–	✓	✓	✓
Wavelength	–	✓	–	✓	–
Deskera	–	✓	✓	✓	✓
HashMicro	–	✓	✓	✓	✓

✓ = Feature supported based on published product information. Always verify with the vendor before purchasing. Feature support may vary by plan.

Frequently Asked Questions: E-Invoicing for Retail in Malaysia

Common questions from Malaysian retail businesses preparing for LHDN MyInvois compliance in 2026.

Can retailers issue one daily consolidated e-invoice instead of per-customer invoices?

Yes. LHDN allows consolidated e-invoicing for B2C retail transactions where the customer does not request an individual invoice. You submit one consolidated invoice per day (or per business cycle) covering all non-requested transactions. If a customer requests an e-invoice at the point of sale, you must issue an individual one.

How do I handle returns and refunds in retail e-invoicing?

Returns and refunds are handled through credit notes in MyInvois. Your e-invoicing software should allow you to issue a credit note referencing the original invoice UUID. For consolidated invoices, the credit note references the consolidated invoice and includes the refund amount.

Does my retail POS need to be replaced to comply with e-invoicing?

Not necessarily. Many POS systems can export transaction data that feeds into a separate e-invoicing module. StoreHub, for example, has native integration. For other POS brands, check if your e-invoicing vendor provides a connector or API. In some cases, a middleware integration is needed.

How does SST apply to retail e-invoices?

6% Sales Tax applies to taxable goods sold in Malaysia (imported or locally manufactured goods above the RM500,000 annual sales threshold). The correct SST code must appear on every taxable invoice. Your software should map product categories to the correct MSIC and SST codes automatically.

More Retail E-Invoicing Resources

Retail Industry GuideFull e-invoicing guide for retail businesses Retail SaaS SolutionsCloud-based e-invoicing software for retail Retail On-Premise OptionsSelf-hosted solutions for retail businesses

Not sure which solution fits your business?

Use our free calculator to estimate your e-invoicing costs and get matched to the best vendors for your industry and budget.

Try the Free Calculator Browse All Vendors

EInvoicingMalaysia.com is an independent directory. We are not affiliated with LHDN or the Malaysian government.